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    LOC4352075 uncharacterized LOC4352075 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352075, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4352075
    Gene description
    uncharacterized LOC4352075
    Locus tag
    OSNPB_120416900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Os12g0416900
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    Genomic context

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    See LOC4352075 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (13295377..13304174)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (12868188..12877061)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene biogenesis of lysosome-related organelles complex 1 subunit 1-like Neighboring gene uncharacterized LOC4352073 Neighboring gene uncharacterized LOC107279750 Neighboring gene uncharacterized LOC107279747

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4352075
    Names
    Os12g0417000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      13295377..13304174
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764502.3 → XP_015619988.1  uncharacterized protein LOC4352075 isoform X1

      UniProtKB/TrEMBL
      A0A0P0Y9H4, H2KWQ8, Q0INP2
      Conserved Domains (3) summary
      pfam03004
      Location:256 → 383
      Transposase_24; Plant transposase (Ptta/En/Spm family)
      pfam03017
      Location:533 → 598
      Transposase_23; TNP1/EN/SPM transposase
      pfam15958
      Location:474 → 542
      DUF4761; Domain of unknown function (DUF4761)

    2. XM_015764510.3 → XP_015619996.1  uncharacterized protein LOC4352075 isoform X3

      UniProtKB/TrEMBL
      A0A0P0Y9H4, Q0INP2
      Conserved Domains (3) summary
      pfam03004
      Location:256 → 382
      Transposase_24; Plant transposase (Ptta/En/Spm family)
      pfam03017
      Location:532 → 597
      Transposase_23; TNP1/EN/SPM transposase
      pfam15958
      Location:473 → 541
      DUF4761; Domain of unknown function (DUF4761)

    3. XM_015764509.3 → XP_015619995.1  uncharacterized protein LOC4352075 isoform X2

      UniProtKB/TrEMBL
      A0A0P0Y9H4, H2KWW2, Q0INP2
      Conserved Domains (3) summary
      pfam03004
      Location:255 → 382
      Transposase_24; Plant transposase (Ptta/En/Spm family)
      pfam03017
      Location:532 → 597
      Transposase_23; TNP1/EN/SPM transposase
      pfam15958
      Location:473 → 541
      DUF4761; Domain of unknown function (DUF4761)

    4. XM_066306385.1 → XP_066162482.1  uncharacterized protein LOC4352075 isoform X2

      UniProtKB/TrEMBL
      H2KWW2

    5. XM_015764508.3 → XP_015619994.1  uncharacterized protein LOC4352075 isoform X1

      UniProtKB/TrEMBL
      A0A0P0Y9H4, H2KWQ8, Q0INP2
      Conserved Domains (3) summary
      pfam03004
      Location:256 → 383
      Transposase_24; Plant transposase (Ptta/En/Spm family)
      pfam03017
      Location:533 → 598
      Transposase_23; TNP1/EN/SPM transposase
      pfam15958
      Location:474 → 542
      DUF4761; Domain of unknown function (DUF4761)

    6. XM_066306384.1 → XP_066162481.1  uncharacterized protein LOC4352075 isoform X1

      UniProtKB/TrEMBL
      H2KWQ8

    RNA

    1. XR_010738505.1 RNA Sequence

    2. XR_001542141.3 RNA Sequence

    3. XR_001542143.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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