U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4352075 uncharacterized LOC4352075 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352075, updated on 16-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4352075
    Gene description
    uncharacterized LOC4352075
    Locus tag
    OSNPB_120416900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Os12g0416900
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 34.3), roots after flowering (RPKM 19.2) and 5 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4352075 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (13295377..13304174)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (12868188..12877061)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene biogenesis of lysosome-related organelles complex 1 subunit 1-like Neighboring gene uncharacterized LOC4352073 Neighboring gene uncharacterized LOC107279750 Neighboring gene uncharacterized LOC107279747

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC4352075
    Names
    Os12g0417000

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      13295377..13304174
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764502.3 → XP_015619988.1  uncharacterized protein LOC4352075 isoform X1

      UniProtKB/TrEMBL
      A0A0P0Y9H4, H2KWQ8, Q0INP2
      Conserved Domains (3) summary
      pfam03004
      Location:256 → 383
      Transposase_24; Plant transposase (Ptta/En/Spm family)
      pfam03017
      Location:533 → 598
      Transposase_23; TNP1/EN/SPM transposase
      pfam15958
      Location:474 → 542
      DUF4761; Domain of unknown function (DUF4761)

    2. XM_015764510.3 → XP_015619996.1  uncharacterized protein LOC4352075 isoform X3

      UniProtKB/TrEMBL
      A0A0P0Y9H4, Q0INP2
      Conserved Domains (3) summary
      pfam03004
      Location:256 → 382
      Transposase_24; Plant transposase (Ptta/En/Spm family)
      pfam03017
      Location:532 → 597
      Transposase_23; TNP1/EN/SPM transposase
      pfam15958
      Location:473 → 541
      DUF4761; Domain of unknown function (DUF4761)

    3. XM_015764509.3 → XP_015619995.1  uncharacterized protein LOC4352075 isoform X2

      UniProtKB/TrEMBL
      A0A0P0Y9H4, H2KWW2, Q0INP2
      Conserved Domains (3) summary
      pfam03004
      Location:255 → 382
      Transposase_24; Plant transposase (Ptta/En/Spm family)
      pfam03017
      Location:532 → 597
      Transposase_23; TNP1/EN/SPM transposase
      pfam15958
      Location:473 → 541
      DUF4761; Domain of unknown function (DUF4761)

    4. XM_066306385.1 → XP_066162482.1  uncharacterized protein LOC4352075 isoform X2

    5. XM_015764508.3 → XP_015619994.1  uncharacterized protein LOC4352075 isoform X1

      UniProtKB/TrEMBL
      A0A0P0Y9H4, H2KWQ8, Q0INP2
      Conserved Domains (3) summary
      pfam03004
      Location:256 → 383
      Transposase_24; Plant transposase (Ptta/En/Spm family)
      pfam03017
      Location:533 → 598
      Transposase_23; TNP1/EN/SPM transposase
      pfam15958
      Location:474 → 542
      DUF4761; Domain of unknown function (DUF4761)

    6. XM_066306384.1 → XP_066162481.1  uncharacterized protein LOC4352075 isoform X1

    RNA

    1. XR_010738505.1 RNA Sequence

    2. XR_001542141.3 RNA Sequence

    3. XR_001542143.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials