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    LOC4344324 NAC domain-containing protein 87 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344324, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344324
    Gene description
    NAC domain-containing protein 87
    Locus tag
    OSNPB_070684800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    NAC15
    Expression
    Broad expression in leaves after flowering (RPKM 32.1), roots before flowering (RPKM 26.5) and 4 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (29274260..29276116, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29040435..29042304, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9266496 Neighboring gene leucine-rich repeat extensin-like protein 5 Neighboring gene uncharacterized LOC9267143 Neighboring gene WUSCHEL-related homeobox 11-like Neighboring gene cyclic dof factor 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NAC domain-containing protein 87
    Names
    NAC transcription factor 15
    OSJNBa0060O17.23
    Os07g0684800
    putative GRAB2 protein(Geminivirus Rep A-binding)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      29274260..29276116 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792377.3 → XP_015647863.1  NAC domain-containing protein 87

      UniProtKB/TrEMBL
      A0A0N7KP30, A2YQ18, A3BNJ0, Q6Z4N0
      Conserved Domains (1) summary
      pfam02365
      Location:22 → 147
      NAM; No apical meristem (NAM) protein
    Nucleotide Protein
    Heading Accession and Version

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