U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4330909 protein FIP1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330909, updated on 16-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4330909
    Gene description
    protein FIP1
    Locus tag
    OSNPB_020778300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1293_A01.1-1; OJ1293_A01.1-2; OJ1534_E09.24-1; OJ1534_E09.24-2
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4330909 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (33441009..33446145)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (32945631..32950810)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355066 Neighboring gene uncharacterized LOC136355067 Neighboring gene isoleucine--tRNA ligase, chloroplastic/mitochondrial Neighboring gene UMP-CMP kinase 4-like Neighboring gene fatty-acid-binding protein 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in late endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein FIP1
    Names
    Os02g0778300
    transmembrane protein 192

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416960.1 → NP_001403889.1  protein FIP1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK058466, AU094312
      UniProtKB/TrEMBL
      A0A0P0VQ92, Q0DX30, Q6ZGC1

    2. NM_001416961.1 → NP_001403890.1  protein FIP1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK100242, AP014958, AU094312
      UniProtKB/TrEMBL
      Q6K7H3, Q6ZGC0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      33441009..33446145
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770407.3 → XP_015625893.1  protein FIP1 isoform X1

      Conserved Domains (1) summary
      pfam14802
      Location:11 → 166
      TMEM192; TMEM192 family
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials