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    LOC4337192 protein REDUCED CHLOROPLAST COVERAGE 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337192, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4337192
    Gene description
    protein REDUCED CHLOROPLAST COVERAGE 3
    Locus tag
    OSNPB_040645100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 54.6), roots before flowering (RPKM 34.0) and 6 other tissues See more
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    Genomic context

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    See LOC4337192 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (33342025..33355163)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (32835149..32848270)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene putative chloride channel-like protein CLC-g Neighboring gene synaptotagmin-5 Neighboring gene VQ motif-containing protein 11 Neighboring gene uncharacterized LOC4337194 Neighboring gene uncharacterized vacuolar membrane protein YML018C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Three novel alleles of FLOURY ENDOSPERM2 (FLO2) confer dull grains with low amylose content in rice. Wu YP, et al. Plant Sci, 2015 Apr. PMID 25711812
    2. A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality. She KC, et al. Plant Cell, 2010 Oct. PMID 20889913, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in organelle organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein REDUCED CHLOROPLAST COVERAGE 3
    Names
    Os04g0645100
    protein TSS

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      33342025..33355163
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780251.3 → XP_015635737.1  protein REDUCED CHLOROPLAST COVERAGE 3

      UniProtKB/TrEMBL
      B8AV88, B9FCT8, Q7XQE6
      Conserved Domains (4) summary
      cd15466
      Location:721 → 863
      CLU-central; An uncharacterized central domain of CLU mitochondrial proteins
      sd00006
      Location:933 → 961
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:931 → 1002
      TPR_12; Tetratricopeptide repeat
      pfam15044
      Location:53 → 92
      CLU_N; Mitochondrial function, CLU-N-term

    RNA

    1. XR_001545391.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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    Research Materials