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    LOC4329667 uncharacterized LOC4329667 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329667, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329667
    Gene description
    uncharacterized LOC4329667
    Locus tag
    OSNPB_020556700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1008_F08.17-1; OJ1008_F08.17-2
    Expression
    Broad expression in flowers (RPKM 31.0), flower buds (RPKM 27.3) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (21533391..21539076)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (21054395..21060122)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene ran-binding protein M homolog Neighboring gene uncharacterized LOC107280142 Neighboring gene protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1 Neighboring gene uncharacterized LOC4329669

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4329667
    Names
    Os02g0556700
    putative T-complex protein 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      21533391..21539076
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770394.3 → XP_015625880.1  uncharacterized protein LOC4329667

      UniProtKB/TrEMBL
      A0A0P0VKC9, Q6ZI82
      Conserved Domains (3) summary
      PTZ00121
      Location:94 → 271
      PTZ00121; MAEBL; Provisional
      pfam05794
      Location:687 → 1178
      Tcp11; T-complex protein 11
      cl05390
      Location:410 → 609
      Tcp11; T-complex protein 11
    Nucleotide Protein
    Heading Accession and Version

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