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    LOC4346500 FRIGIDA-like protein 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346500, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346500
    Gene description
    FRIGIDA-like protein 3
    Locus tag
    OSNPB_090248200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1695_A02.5-1; OJ1695_A02.5-2
    Expression
    Ubiquitous expression in flower buds (RPKM 68.1), flowers (RPKM 65.7) and 6 other tissues See more
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    Genomic context

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    See LOC4346500 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (8006880..8011781, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (3660474..3665425, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene D-aminoacyl-tRNA deacylase Neighboring gene fasciclin-like arabinogalactan protein 2 Neighboring gene FRIGIDA-like protein 3 Neighboring gene uncharacterized LOC136351909

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    FRIGIDA-like protein 3
    Names
    ABI3 interacting protein
    Os09g0248200
    P0499G10.20-1
    P0499G10.20-2
    putative ABI3-interacting protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      8006880..8011781 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756363.2 → XP_015611849.1  FRIGIDA-like protein 3

      UniProtKB/TrEMBL
      B9G2B0, Q0J384, Q6H5J7, Q6K487, Q6K488
      Conserved Domains (1) summary
      pfam07899
      Location:164 → 459
      Frigida; Frigida-like protein
    Nucleotide Protein
    Heading Accession and Version

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