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    LOC4331158 probable protein S-acyltransferase 15 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331158, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331158
    Gene description
    probable protein S-acyltransferase 15
    Locus tag
    OSNPB_020819100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1202_E07.17
    Expression
    Ubiquitous expression in roots after flowering (RPKM 14.6), leaves after flowering (RPKM 12.2) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (35654369..35657338)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (35155649..35158635)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene heavy metal-associated isoprenylated plant protein 3 Neighboring gene uncharacterized LOC136355151 Neighboring gene thioredoxin-like 3-2, chloroplastic Neighboring gene pumilio homolog 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Plant architecture and grain yield are regulated by the novel DHHC-type zinc finger protein genes in rice (Oryza sativa L.). Zhou B, et al. Plant Sci, 2017 Jan. PMID 27964781
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The Os02g0819100 gene is associated with grain yield in rice.
      Title: Plant architecture and grain yield are regulated by the novel DHHC-type zinc finger protein genes in rice (Oryza sativa L.).
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables palmitoyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable protein S-acyltransferase 15
    Names
    Os02g0819100
    S-acyl transferase DHHC1
    zinc finger-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      35654369..35657338
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767899.3 → XP_015623385.1  probable protein S-acyltransferase 15

      UniProtKB/TrEMBL
      A0A1L6BXJ7, B9F4I6, Q6K9R3
      Conserved Domains (1) summary
      pfam01529
      Location:95 → 212
      DHHC; DHHC palmitoyltransferase
    Nucleotide Protein
    Heading Accession and Version

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