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    LOC4345683 probable CCR4-associated factor 1 homolog 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345683, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345683
    Gene description
    probable CCR4-associated factor 1 homolog 7
    Locus tag
    OSNPB_080440300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0528B09.6
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    Genomic context

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    See LOC4345683 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (21557367..21558352)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (21418721..21420017)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene temperature-induced lipocalin-1 Neighboring gene poly(A)-specific ribonuclease PARN-like Neighboring gene stromal cell-derived factor 2-like protein Neighboring gene NADP-dependent glyceraldehyde-3-phosphate dehydrogenase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables poly(A)-specific ribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCR4-NOT complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of CCR4-NOT core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable CCR4-associated factor 1 homolog 7
    Names
    Os08g0440300
    P0524F03.33
    putative CCR4-NOT transcription complex, subunit 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      21557367..21558352
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795589.3 → XP_015651075.1  probable CCR4-associated factor 1 homolog 7

      UniProtKB/TrEMBL
      A2YVL6, A3BTI8, Q6Z9G7, Q6Z9H7
      Conserved Domains (1) summary
      cl23804
      Location:18 → 276
      CAF1; CAF1 family ribonuclease
    Nucleotide Protein
    Heading Accession and Version

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