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    LOC4341285 amino acid permease 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341285, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4341285
    Gene description
    amino acid permease 3
    Locus tag
    OSNPB_060556000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 86.4), leaves before flowering (RPKM 28.2) and 5 other tissues See more
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    Genomic context

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    See LOC4341285 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (22043806..22050642)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (21185033..21192064)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein eS24z Neighboring gene tRNA A64-2'-O-ribosylphosphate transferase Neighboring gene amino acid permease 3 Neighboring gene F-box protein At5g03100 Neighboring gene pollen allergen Phl p 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables amino acid transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in amino acid transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    amino acid permease 3
    Names
    Os06g0556000
    P0458E11.23
    putative amino acid transporter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      22043806..22050642
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788637.3 → XP_015644123.1  amino acid permease 3

      UniProtKB/TrEMBL
      A0A0P0WXN8, A2YE14, A3BCP9, Q5Z9R9
      Conserved Domains (1) summary
      pfam01490
      Location:42 → 473
      Aa_trans; Transmembrane amino acid transporter protein
    Nucleotide Protein
    Heading Accession and Version

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