U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4340405 polyadenylate-binding protein-interacting protein 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340405, updated on 12-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4340405
    Gene description
    polyadenylate-binding protein-interacting protein 7
    Locus tag
    OSNPB_060199200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1147_D11.1-1
    Expression
    Ubiquitous expression in roots after flowering (RPKM 104.9), leaves before flowering (RPKM 90.6) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4340405 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (5202736..5207544, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (5036128..5041234, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene putative glycine-rich cell wall structural protein 1 Neighboring gene pentatricopeptide repeat-containing protein At3g18110, chloroplastic Neighboring gene U4 spliceosomal RNA Neighboring gene uncharacterized LOC107278582 Neighboring gene phosphopantothenoylcysteine decarboxylase-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    polyadenylate-binding protein-interacting protein 7
    Names
    B1172G12.23-1
    Os06g0199200
    smr domain-containing protein -like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      5202736..5207544 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787622.2 → XP_015643108.1  polyadenylate-binding protein-interacting protein 7

      UniProtKB/TrEMBL
      A0A0N7KLQ1, A2YAD3, Q0DDU3, Q69K57
      Conserved Domains (3) summary
      cd14371
      Location:206 → 248
      CUE_CID7_like; CUE domain found in CTC-interacting domain proteins CID5, CID6, CID7 and similar proteins
      pfam08590
      Location:381 → 440
      DUF1771; Domain of unknown function (DUF1771)
      cl02619
      Location:448 → 531
      Smr; Smr domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials