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    LOC4337437 phosphomannomutase-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337437, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4337437
    Gene description
    phosphomannomutase-like
    Locus tag
    OSNPB_040682300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PMM; OsPMM; OsJ_015937
    Expression
    Ubiquitous expression in roots after flowering (RPKM 20.4), leaves after flowering (RPKM 19.1) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (35348193..35351222)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (34828241..34831215)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene anamorsin homolog 2-like Neighboring gene elicitor-responsive protein 3-like Neighboring gene uncharacterized LOC4337438 Neighboring gene putative threonine aspartase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Molecular and functional analysis of phosphomannomutase (PMM) from higher plants and genetic evidence for the involvement of PMM in ascorbic acid biosynthesis in Arabidopsis and Nicotiana benthamiana. Qian W, et al. Plant J, 2007 Feb. PMID 17217471
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphomannomutase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in GDP-mannose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mannose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein N-linked glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphomannomutase
    Names
    LOC_Os04g58580
    OSJNBa0032F06.16
    putative phosphomannomutase
    NP_001389388.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402459.1 → NP_001389388.1  phosphomannomutase

      Status: VALIDATED

      Source sequence(s)
      AK061384, CI248031
      UniProtKB/Swiss-Prot
      A2XZ30, B7E696, Q259G4, Q7XPW5
      UniProtKB/TrEMBL
      A0A0B4U0M1, B8ARV5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      35348193..35351222
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XPW5.2 GenPept UniProtKB/Swiss-Prot:Q7XPW5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials