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    LOC9269879 protein SAMBA [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9269879, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9269879
    Gene description
    protein SAMBA
    Locus tag
    OSNPB_100575950
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 16.4), leaves after flowering (RPKM 16.3) and 6 other tissues See more
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    Genomic context

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    See LOC9269879 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (23630105..23631028, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (22937881..22938839, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene probable plastid-lipid-associated protein 3, chloroplastic Neighboring gene uncharacterized LOC4349490 Neighboring gene uncharacterized LOC107276615 Neighboring gene NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B Neighboring gene inositol-tetrakisphosphate 1-kinase 5-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables anaphase-promoting complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of organ growth IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SAMBA
    Names
    Os10g0575950

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      23630105..23631028 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758594.3 → XP_015614080.1  protein SAMBA isoform X2

      UniProtKB/TrEMBL
      A0A5S6RBR5, B8BIE5, B9G761, C7J7H6, Q8W3H9

    2. XM_015758592.3 → XP_015614078.1  protein SAMBA isoform X1

    Nucleotide Protein
    Heading Accession and Version

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