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    LOC4339327 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339327, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4339327
    Gene description
    probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
    Locus tag
    OSNPB_050517200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 19.4), roots before flowering (RPKM 16.2) and 6 other tissues See more
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    Genomic context

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    See LOC4339327 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (25758663..25763384)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (25641603..25646405)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107277192 Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene uncharacterized LOC4339328 Neighboring gene gamma-glutamyl hydrolase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables trehalose-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in trehalose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in trehalose metabolism in response to stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
    Names
    Os05g0517200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      25758663..25763384
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784527.2 → XP_015640013.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

      UniProtKB/TrEMBL
      A0A0P0WPQ7, B9FL55, Q75II7
      Conserved Domains (1) summary
      PLN02205
      Location:1 → 864
      PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
    Nucleotide Protein
    Heading Accession and Version

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