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    LOC4338592 receptor-like cytoplasmic kinase 185 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338592, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4338592
    Gene description
    receptor-like cytoplasmic kinase 185
    Locus tag
    OSNPB_050372100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 25.8), flower buds (RPKM 25.6) and 6 other tissues See more
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    Genomic context

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    See LOC4338592 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (18023486..18030859)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (17922842..17930289)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase T3-like Neighboring gene succinate dehydrogenase subunit 4, mitochondrial-like Neighboring gene ribosomal RNA-processing protein 14-C Neighboring gene cytochrome P450 CYP72A616

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The bifunctional plant receptor, OsCERK1, regulates both chitin-triggered immunity and arbuscular mycorrhizal symbiosis in rice. Miyata K, et al. Plant Cell Physiol, 2014 Nov. PMID 25231970
    2. A receptor-like cytoplasmic kinase targeted by a plant pathogen effector is directly phosphorylated by the chitin receptor and mediates rice immunity. Yamaguchi K, et al. Cell Host Microbe, 2013 Mar 13. PMID 23498959
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The bifunctional plant receptor CERK1 regulates both chitin-triggered immunity and arbuscular mycorrhizal symbiosis in rice.
      Title: The bifunctional plant receptor, OsCERK1, regulates both chitin-triggered immunity and arbuscular mycorrhizal symbiosis in rice.
    2. LCK185(Os05g0372100) is targeted by Xanthomonas oryzae effector is directly phosphorylated by the CERK1 and mediates rice immunity.
      Title: A receptor-like cytoplasmic kinase targeted by a plant pathogen effector is directly phosphorylated by the chitin receptor and mediates rice immunity.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    receptor-like cytoplasmic kinase 185
    Names
    Os05g0372100
    serine/threonine-protein kinase CDL1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      18023486..18030859
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784254.2 → XP_015639740.1  receptor-like cytoplasmic kinase 185 isoform X1

      UniProtKB/Swiss-Prot
      Q0DIQ0, Q6I5Q6
      UniProtKB/TrEMBL
      A0A0N7KKN3
      Conserved Domains (1) summary
      cd14066
      Location:86 → 353
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    2. XM_026025845.2 → XP_025881630.1  receptor-like cytoplasmic kinase 185 isoform X2

      UniProtKB/TrEMBL
      A0A0N7KKN3
      Conserved Domains (1) summary
      cl21453
      Location:1 → 227
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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