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    LOC4351052 probable small nuclear ribonucleoprotein F [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351052, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4351052
    Gene description
    probable small nuclear ribonucleoprotein F
    Locus tag
    OSNPB_110657300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 33.7), flowers (RPKM 27.7) and 6 other tissues See more
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    Genomic context

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    See LOC4351052 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (28274269..28276254)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (26313014..26315233)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene peptide chain release factor APG3, chloroplastic Neighboring gene alkylated DNA repair protein ALKBH8 homolog Neighboring gene pollen-specific leucine-rich repeat extensin-like protein 3 Neighboring gene disease resistance protein RGA5-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spliceosomal snRNP assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of pICln-Sm protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable small nuclear ribonucleoprotein F
    Names
    Os11g0657300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      28274269..28276254
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761746.3 → XP_015617232.1  probable small nuclear ribonucleoprotein F

      UniProtKB/TrEMBL
      B8BLN4, B9G8N6, Q2R065, Q2R066
      Conserved Domains (1) summary
      cd01722
      Location:7 → 75
      Sm_F; Sm protein F
    Nucleotide Protein
    Heading Accession and Version

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