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    LOC4327059 calcium-binding protein PBP1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327059, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327059
    Gene description
    calcium-binding protein PBP1
    Locus tag
    OSNPB_010783700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4327059 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (33813556..33814109, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (33207703..33208688, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene universal stress protein PHOS32 Neighboring gene frataxin, mitochondrial Neighboring gene cysteine-rich receptor-like protein kinase 44 Neighboring gene cysteine-rich receptor-like protein kinase 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. OsCCD1, a novel small calcium-binding protein with one EF-hand motif, positively regulates osmotic and salt tolerance in rice. Jing P, et al. Plant Sci, 2016 Jun. PMID 27095404
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. OsCCD1 gene probably affects the DREB2B and its downstream genes to positively regulate osmotic and salt tolerance in rice seedlings.
      Title: OsCCD1, a novel small calcium-binding protein with one EF-hand motif, positively regulates osmotic and salt tolerance in rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium-binding protein PBP1
    Names
    B1100D10.42
    Os01g0783700
    putative EF-hand Ca2+-binding protein CCD1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      33813556..33814109 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770217.3 → XP_015625703.1  calcium-binding protein PBP1

      UniProtKB/TrEMBL
      A0A0P0V907, A2WVS9, A2ZYH6, Q8LQQ2
      Conserved Domains (1) summary
      PTZ00183
      Location:10 → 93
      PTZ00183; centrin; Provisional
    Nucleotide Protein
    Heading Accession and Version

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