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    LOC4342148 uncharacterized LOC4342148 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342148, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4342148
    Gene description
    uncharacterized LOC4342148
    Locus tag
    OSNPB_060730600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1206D04.9
    Expression
    Broad expression in roots before flowering (RPKM 23.1), flower buds (RPKM 15.7) and 6 other tissues See more
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    Genomic context

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    See LOC4342148 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (32007374..32016398, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (31136662..31145720, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4342146 Neighboring gene uncharacterized LOC4342147 Neighboring gene uncharacterized LOC4342149 Neighboring gene signal peptide peptidase-like 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4342148
    Names
    OSJNBa0069C14.32
    Os06g0730600
    protease 2
    putative oligopeptidase B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      32007374..32016398 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787503.3 → XP_015642989.1  uncharacterized protein LOC4342148

      UniProtKB/TrEMBL
      B9FR10, Q0D9A2, Q5Z417
      Conserved Domains (2) summary
      COG1770
      Location:42 → 739
      PtrB; Protease II [Amino acid transport and metabolism]
      pfam00326
      Location:523 → 740
      Peptidase_S9; Prolyl oligopeptidase family
    Nucleotide Protein
    Heading Accession and Version

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