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    LOC4350406 large ribosomal subunit protein eL38z/eL38y [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350406, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4350406
    Gene description
    large ribosomal subunit protein eL38z/eL38y
    Locus tag
    OSNPB_110433900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 128.7), flowers (RPKM 85.0) and 6 other tissues See more
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    Genomic context

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    See LOC4350406 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (15898507..15899999)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (14044162..14045788)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At3g49240, mitochondrial Neighboring gene protein ALP1-like Neighboring gene uncharacterized LOC136354103 Neighboring gene uncharacterized LOC4350407 Neighboring gene protein ACCELERATED CELL DEATH 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein-RNA complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    large ribosomal subunit protein eL38z/eL38y
    Names
    60S ribosomal protein L38
    Os11g0433900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      15898507..15899999
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762235.3 → XP_015617721.1  large ribosomal subunit protein eL38z/eL38y

      UniProtKB/TrEMBL
      A0A0N7KSV0, B8B772, B8BKA7, Q0IT01, Q8GVY2
      Conserved Domains (1) summary
      pfam01781
      Location:2 → 68
      Ribosomal_L38e; Ribosomal L38e protein family
    Nucleotide Protein
    Heading Accession and Version

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