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    LOC4347708 ribonuclease 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347708, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347708
    Gene description
    ribonuclease 3
    Locus tag
    OSNPB_090537700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4347708 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (25598035..25600035, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (21155961..21157951, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9268165 Neighboring gene peptidyl-prolyl cis-trans isomerase CYP21-1 Neighboring gene uncharacterized LOC107278966 Neighboring gene small nucleolar RNA J26

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overexpression of an S-like ribonuclease gene, OsRNS4, confers enhanced tolerance to high salinity and hyposensitivity to phytochrome-mediated light signals in rice. Zheng J, et al. Plant Sci, 2014 Jan. PMID 24268167
    2. Cloning and characterization of an RNase-related protein gene preferentially expressed in rice stems. Wei JY, et al. Biosci Biotechnol Biochem, 2006 Apr. PMID 16636480
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. OsRNS4 negatively regulates photomorphogenesis and plays an important role in regulating both the stress and abscisic acid responses in rice.
      Title: Overexpression of an S-like ribonuclease gene, OsRNS4, confers enhanced tolerance to high salinity and hyposensitivity to phytochrome-mediated light signals in rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribonuclease T2 activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribonuclease 3
    Names
    Os09g0537700
    P0229B10.16
    P0569E11.38
    drought-induced S-like ribonuclease

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      25598035..25600035 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795831.3 → XP_015651317.1  ribonuclease 3

      UniProtKB/TrEMBL
      A0A0P0XPV8, A2Z3I6, A3C107, Q69JX7, Q940D3
      Conserved Domains (1) summary
      pfam00445
      Location:30 → 213
      Ribonuclease_T2; Ribonuclease T2 family
    Nucleotide Protein
    Heading Accession and Version

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