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    LOC4332288 protein FAR1-RELATED SEQUENCE 6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332288, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332288
    Gene description
    protein FAR1-RELATED SEQUENCE 6
    Locus tag
    OSNPB_030255000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4332288 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (8241961..8245271)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (8191619..8195200)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene probable E3 ubiquitin-protein ligase LOG2 Neighboring gene uncharacterized LOC136355758 Neighboring gene beta-galactosidase 6-like Neighboring gene protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein FAR1-RELATED SEQUENCE 6
    Names
    Os03g0255000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      8241961..8245271
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776772.3 → XP_015632258.1  protein FAR1-RELATED SEQUENCE 6

      UniProtKB/TrEMBL
      A0A0P0VVK9, Q10NX9
      Conserved Domains (4) summary
      PLN03097
      Location:108 → 720
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      pfam04434
      Location:640 → 672
      SWIM; SWIM zinc finger
      pfam03101
      Location:126 → 232
      FAR1; FAR1 DNA-binding domain
      pfam10551
      Location:373 → 454
      MULE; MULE transposase domain
    Nucleotide Protein
    Heading Accession and Version

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