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    LOC4327130 monothiol glutaredoxin-S1, mitochondrial-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327130, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4327130
    Gene description
    monothiol glutaredoxin-S1, mitochondrial-like
    Locus tag
    OSNPB_010174900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GRXS1
    Expression
    Broad expression in mature seeds (RPKM 161.0), flower buds (RPKM 37.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (3852512..3855303)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (3842746..3845466)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH domain-containing protein 1-like Neighboring gene protein kinase PINOID 2-like Neighboring gene uncharacterized LOC4327131 Neighboring gene protein THYLAKOID RHODANESE-LIKE, chloroplastic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in mitochondrial matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    monothiol glutaredoxin-S1, mitochondrial
    Names
    LOC_Os01g07950
    OSJNBa0089K24.28
    glutaredoxin-related protein -like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001406301.1 → NP_001393230.1  monothiol glutaredoxin-S1, mitochondrial

      Status: VALIDATED

      Source sequence(s)
      CF313303, CI260648, CI736443, CV722853
      UniProtKB/Swiss-Prot
      A0A0P0UYU1, B7E5J7, Q0JQ97, Q5VR05
      UniProtKB/TrEMBL
      B9ETE3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      3852512..3855303
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0JQ97.2 GenPept UniProtKB/Swiss-Prot:Q0JQ97

    Gene LinkOut

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