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    LOC4328209 phosphatidylinositol/phosphatidylcholine transfer protein SFH12 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328209, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328209
    Gene description
    phosphatidylinositol/phosphatidylcholine transfer protein SFH12
    Locus tag
    OSNPB_020133200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flower buds (RPKM 57.0) and flowers (RPKM 41.1) See more
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    Genomic context

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    See LOC4328209 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (1756091..1760965, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (1748475..1753358, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene cyclin-T1-1 Neighboring gene phosphatidylinositol/phosphatidylcholine transfer protein SFH6 Neighboring gene structural maintenance of chromosomes protein 3 Neighboring gene structural maintenance of chromosomes protein 3 Neighboring gene uncharacterized LOC136355140

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    phosphatidylinositol/phosphatidylcholine transfer protein SFH12
    Names
    Os02g0133200
    P0030G11.14
    putative phosphatidylinositol/ phophatidylcholine transfer protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      1756091..1760965 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771224.3 → XP_015626710.1  phosphatidylinositol/phosphatidylcholine transfer protein SFH12 isoform X2

      UniProtKB/TrEMBL
      A0A0P0VEA1, B8AH27, B9F2A8, Q6Z6I5
      Conserved Domains (3) summary
      smart00516
      Location:164 → 330
      SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
      smart01100
      Location:94 → 137
      CRAL_TRIO_N; CRAL/TRIO, N-terminal domain
      pfam08317
      Location:550 → 624
      Spc7; Spc7 kinetochore protein

    2. XM_015771223.3 → XP_015626709.1  phosphatidylinositol/phosphatidylcholine transfer protein SFH12 isoform X1

      UniProtKB/TrEMBL
      B9F2A8
      Conserved Domains (3) summary
      smart00516
      Location:164 → 330
      SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
      smart01100
      Location:94 → 137
      CRAL_TRIO_N; CRAL/TRIO, N-terminal domain
      pfam08317
      Location:550 → 624
      Spc7; Spc7 kinetochore protein
    Nucleotide Protein
    Heading Accession and Version

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