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    LOC4343653 zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343653, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4343653
    Gene description
    zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
    Locus tag
    OSNPB_070569700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SAP16; OsSAP16; OJ1019_E02.22
    Expression
    Broad expression in roots before flowering (RPKM 63.4), leaves after flowering (RPKM 25.3) and 5 other tissues See more
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    Genomic context

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    See LOC4343653 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (23160204..23162709)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (22930745..22933215)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4343651 Neighboring gene L-type lectin-domain containing receptor kinase IX.1 Neighboring gene chaperonin-like RbcX protein 2, chloroplastic Neighboring gene L-type lectin-domain containing receptor kinase IX.1 Neighboring gene insulin-degrading enzyme-like 1, peroxisomal

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Natural variation reveals that OsSAP16 controls low-temperature germination in rice. Wang X, et al. J Exp Bot, 2018 Jan 23. PMID 29237030, Free PMC Article
    2. Overexpression of OsSAP16 Regulates Photosynthesis and the Expression of a Broad Range of Stress Response Genes in Rice (Oryza sativa L.). Wang F, et al. PLoS One, 2016. PMID 27303811, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Loss of OsSAP16 function reduces germination while greater expression of OsSAP16 enhances germination at low temperature (LTG). In addition, accessions with extremely high and low LTG values have correspondingly high and low OsSAP16 expression at low temperatures, suggesting that variation in expression of the OsSAP16 gene contributes to LTG variation.
      Title: Natural variation reveals that OsSAP16 controls low-temperature germination in rice.
    2. Data show that overexpression of LOC_Os07g38240 (OsSAP16) led to global changes in gene expression consistent with the function of zinc-finger transcription factors.
      Title: Overexpression of OsSAP16 Regulates Photosynthesis and the Expression of a Broad Range of Stress Response Genes in Rice (Oryza sativa L.).
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
    Names
    LOC_Os07g38240
    putative arsenite inducible RNA associated protein
    zinc finger AN1 and C2H2 domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422219.1 → NP_001409148.1  zinc finger AN1 and C2H2 domain-containing stress-associated protein 16

      Status: VALIDATED

      Source sequence(s)
      AU088671, CF309834, CF309835, D46889, HQ324818
      UniProtKB/Swiss-Prot
      Q0D5B9, Q7XIH5
      UniProtKB/TrEMBL
      A0A8J8XVJ2, B8B7I4, B9FY02, G8CTM0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      23160204..23162709
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0D5B9.2 GenPept UniProtKB/Swiss-Prot:Q0D5B9

    Gene LinkOut

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