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    LOC4324777 beta-galactosidase 3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324777, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4324777
    Gene description
    beta-galactosidase 3-like
    Locus tag
    OSNPB_010875500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flower buds (RPKM 25.8), flowers (RPKM 21.9) and 3 other tissues See more
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    Genomic context

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    See LOC4324777 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38624607..38631239)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37994390..38001145)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4324775 Neighboring gene ubiquitin-like domain-containing CTD phosphatase Neighboring gene uncharacterized LOC4324778 Neighboring gene glycosyltransferase BC10-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-galactosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell wall IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in vacuole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-galactosidase 3
    Names
    LOC_Os01g65460
    Lactase 3
    P0648C09.21
    P0698A10.24
    putative beta-D-galactosidase
    putative beta-galactosidase
    NP_001383801.1
    NP_001383802.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001396872.1 → NP_001383801.1  beta-galactosidase 3

      Status: VALIDATED

      Source sequence(s)
      AK102715, CI231637
      UniProtKB/Swiss-Prot
      Q5N8X6, Q8RYX9
      UniProtKB/TrEMBL
      B7ETJ0, B9EUX8
      Conserved Domains (1) summary
      PLN03059
      Location:104 → 919
      PLN03059; beta-galactosidase; Provisional

    2. NM_001396873.1 → NP_001383802.1  beta-galactosidase 3

      Status: VALIDATED

      Source sequence(s)
      AK102715, CI144937
      UniProtKB/Swiss-Prot
      Q5N8X6, Q8RYX9
      UniProtKB/TrEMBL
      B7ETJ0, B9EUX8
      Conserved Domains (1) summary
      PLN03059
      Location:104 → 919
      PLN03059; beta-galactosidase; Provisional

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      38624607..38631239
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5N8X6.1 GenPept UniProtKB/Swiss-Prot:Q5N8X6

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