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    LOC4324850 scarecrow-like protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324850, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324850
    Gene description
    scarecrow-like protein 1
    Locus tag
    OSNPB_010881500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1065E10.4
    Expression
    Broad expression in roots before flowering (RPKM 165.3), roots after flowering (RPKM 158.3) and 6 other tissues See more
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    Genomic context

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    See LOC4324850 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38892011..38895525, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (38261863..38265531, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene bidirectional sugar transporter SWEET1a-like Neighboring gene uncharacterized LOC4324849 Neighboring gene uncharacterized LOC9268780 Neighboring gene F-box protein SKP2A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    scarecrow-like protein 1
    Names
    Os01g0881500
    P0018C10.63
    putative chitin-inducible gibberellin-responsive protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      38892011..38895525 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755342.2 → XP_015610828.1  scarecrow-like protein 1

      UniProtKB/TrEMBL
      A0A0P0VBD1, A0A8J8YHI2, B9EUY6, Q8RZQ6
      Conserved Domains (1) summary
      pfam03514
      Location:184 → 552
      GRAS; GRAS domain family
    Nucleotide Protein
    Heading Accession and Version

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