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    LOC4352144 protein LOWER TEMPERATURE 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352144, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4352144
    Gene description
    protein LOWER TEMPERATURE 1
    Locus tag
    OSNPB_120442900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 8.4), leaves before flowering (RPKM 7.9) and 6 other tissues See more
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    Genomic context

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    See LOC4352144 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (15267036..15273914, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (14838136..14845450, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107279806 Neighboring gene sulfite oxidase Neighboring gene cytochrome P450 94B3 Neighboring gene vignain-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Cul4-RING E3 ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein LOWER TEMPERATURE 1
    Names
    Os12g0442900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      15267036..15273914 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015763187.2 → XP_015618673.1  protein LOWER TEMPERATURE 1

      UniProtKB/TrEMBL
      B9GCZ8, Q0INJ3, Q2QS19
      Conserved Domains (3) summary
      PLN03124
      Location:70 → 178
      PLN03124; poly [ADP-ribose] polymerase; Provisional
      pfam02037
      Location:143 → 175
      SAP; SAP domain
      pfam10172
      Location:28 → 86
      DDA1; Det1 complexing ubiquitin ligase
    Nucleotide Protein
    Heading Accession and Version

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