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    LOC4336192 peptide methionine sulfoxide reductase A2-1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336192, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4336192
    Gene description
    peptide methionine sulfoxide reductase A2-1-like
    Locus tag
    OSNPB_040482000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MSRA2-1; OsJ_15220; OsMSRA2.1
    Expression
    Broad expression in leaves after flowering (RPKM 65.3), roots after flowering (RPKM 40.8) and 6 other tissues See more
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    Genomic context

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    See LOC4336192 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (24599307..24601292, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24103069..24104936, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene ABC transporter B family member 15 Neighboring gene probable long-chain-alcohol O-fatty-acyltransferase 5 Neighboring gene probable long-chain-alcohol O-fatty-acyltransferase 5 Neighboring gene uncharacterized LOC136356330 Neighboring gene peptide methionine sulfoxide reductase A2-2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptide-methionine (S)-S-oxide reductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peptide-methionine (S)-S-oxide reductase A2-1
    Names
    LOC_Os04g40600
    OSJNBb0011N17.16
    Peptide Met(O) reductase
    Peptide-methionine (S)-S-oxide reductase
    Protein-methionine-S-oxide reductase
    peptide methionine sulfoxide reductase A2-1
    NP_001406512.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419583.1 → NP_001406512.1  peptide-methionine (S)-S-oxide reductase A2-1

      Status: VALIDATED

      Source sequence(s)
      AU082564, CI058257, CV723421
      UniProtKB/Swiss-Prot
      A0A0P0WBW6, Q7XUP7
      UniProtKB/TrEMBL
      A2XUR5, Q25AK7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      24599307..24601292 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XUP7.2 GenPept UniProtKB/Swiss-Prot:Q7XUP7

    Gene LinkOut

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