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    LOC4349503 TOM1-like protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349503, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4349503
    Gene description
    TOM1-like protein 1
    Locus tag
    OSNPB_100578000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    tom2
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 45.0), roots after flowering (RPKM 44.3) and 6 other tissues See more
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    Genomic context

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    See LOC4349503 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (23744276..23747193)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (23052142..23055058)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene inactive poly [ADP-ribose] polymerase RCD1 Neighboring gene glycerol-3-phosphate acyltransferase, chloroplastic Neighboring gene cellulose synthase-like protein D1 Neighboring gene uncharacterized LOC4349506 Neighboring gene putative pentatricopeptide repeat-containing protein At1g16830

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TOM1-like protein 1
    Names
    Os10g0578000
    target of Myb protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423113.1 → NP_001410042.1  TOM1-like protein 1

      Status: VALIDATED

      Source sequence(s)
      AJ495791, AU082609, CI310624, CI366340
      UniProtKB/TrEMBL
      A2ZAK7, A3C7M7, Q336N2, Q8W3G1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      23744276..23747193
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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