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    LOC4328957 N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328957, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328957
    Gene description
    N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic
    Locus tag
    OSNPB_020266000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4328957 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (9529656..9532528)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (9502432..9505311)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene late embryogenesis abundant protein At1g64065 Neighboring gene reticulon-like protein B2 Neighboring gene U1 small nuclear ribonucleoprotein C-1 Neighboring gene pentatricopeptide repeat-containing protein At3g16010

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphoribosylanthranilate isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tryptophan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic
    Names
    Os02g0266000
    P0006C08.30
    putative phosphoribosylanthranilate isomerase 1 (PAI1)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      9529656..9532528
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767760.3 → XP_015623246.1  N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0VHJ7, A0A8J8Y0B9, B9F4X0, Q6ETX4
      Conserved Domains (2) summary
      PLN02363
      Location:52 → 276
      PLN02363; phosphoribosylanthranilate isomerase
      cd00405
      Location:70 → 271
      PRAI; Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, ...
    Nucleotide Protein
    Heading Accession and Version

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