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    cob apocytochrome b [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 6450178, updated on 12-Jul-2024

    Summary

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    Gene symbol
    cob
    Gene description
    apocytochrome b
    Locus tag
    OrsajM_p40
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Oryza sativa Japonica Group (cultivar: Nipponbare)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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    Genomic context

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    See cob in Genome Data Viewer
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) MT (non-nuclear) NC_011033.1 (303848..305041, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) MT (non-nuclear) NC_011033.1 (303848..305041, complement)

    Chromosome MT - NC_011033.1Genomic Context describing neighboring genes Neighboring gene NADH dehydrogenase subunit 1 Neighboring gene NADH dehydrogenase subunit 4L Neighboring gene hypothetical protein Neighboring gene NADH dehydrogenase subunit 5 Neighboring gene maturase-related protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants. Notsu Y, et al. Mol Genet Genomics, 2002 Dec. PMID 12471441
    2. The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Boeckmann B, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520024, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Miscellaneous features

    • Loc: c303918 C to U RNA editing
    • Loc: c303923 C to U RNA editing
    • Loc: c303944 C to U RNA editing
    • Loc: c303961 C to U RNA editing
    • Loc: c304060 C to U RNA editing
    • Loc: c304134 C to U RNA editing
    • Loc: c304189 C to U RNA editing
    • Loc: c304234 C to U RNA editing
    • Loc: c304317 C to U RNA editing
    • Loc: c304327 C to U RNA editing
    • Loc: c304362 C to U RNA editing
    • Loc: c304462 C to U RNA editing
    • Loc: c304474 C to U RNA editing
    • Loc: c304478 C to U RNA editing
    • Loc: c304623 C to U RNA editing
    • Loc: c304717 C to U RNA editing
    • Loc: c304744 C to U RNA editing
    • Loc: c304756 C to U RNA editing
    • Loc: c304864 C to U RNA editing

    General protein information

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    Names
    apocytochrome b

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_011033.1 Reference assembly

      Range
      303848..305041 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_002000585.1 apocytochrome b [Oryza sativa Japonica Group]

      See identical proteins and their annotated locations for YP_002000585.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P0C523, P0C524, P14833, P92682, Q35293
      UniProtKB/TrEMBL
      Q8HCN3
      Conserved Domains (3) summary
      MTH00156
      Location:19 → 362
      CYTB; cytochrome b; Provisional
      cd00284
      Location:14 → 213
      Cytochrome_b_N; Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, ...
      cd00290
      Location:214 → 360
      cytochrome_b_C; Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0C524.1

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    Molecular Biology Databases
    Research Materials