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    LOC4335022 uncharacterized LOC4335022 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335022, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4335022
    Gene description
    uncharacterized LOC4335022
    Locus tag
    OSNPB_040150300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in milk grains (RPKM 12.0), roots before flowering (RPKM 1.5) and 5 other tissues See more
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    Genomic context

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    See LOC4335022 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (3556429..3561935)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (3465230..3470793)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112938816 Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC136356059 Neighboring gene uncharacterized LOC107276485

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4335022
    Names
    Os04g0150300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      3556429..3561935
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066310069.1 → XP_066166166.1  uncharacterized protein LOC4335022

      UniProtKB/TrEMBL
      A3AQN5, Q7XMN8

    2. XM_066310070.1 → XP_066166167.1  uncharacterized protein LOC4335022

      UniProtKB/TrEMBL
      A3AQN5, Q7XMN8

    3. XM_015781670.3 → XP_015637156.1  uncharacterized protein LOC4335022

      UniProtKB/TrEMBL
      A3AQN5, Q7XMN8
      Conserved Domains (2) summary
      pfam04578
      Location:686 → 742
      DUF594; Protein of unknown function, DUF594
      pfam13968
      Location:52 → 390
      DUF4220; Domain of unknown function (DUF4220)

    4. XM_015781669.3 → XP_015637155.1  uncharacterized protein LOC4335022

      UniProtKB/TrEMBL
      A3AQN5, Q7XMN8
      Conserved Domains (2) summary
      pfam04578
      Location:686 → 742
      DUF594; Protein of unknown function, DUF594
      pfam13968
      Location:52 → 390
      DUF4220; Domain of unknown function (DUF4220)

    RNA

    1. XR_001545651.3 RNA Sequence

    2. XR_010741049.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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