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    LOC4346039 serrate RNA effector molecule [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346039, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346039
    Gene description
    serrate RNA effector molecule
    Locus tag
    OSNPB_080517300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4346039 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (25823061..25828605, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (25676680..25682362, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene LOB domain-containing protein 24 Neighboring gene calcium-transporting ATPase 5, plasma membrane-type-like Neighboring gene uncharacterized LOC136351633 Neighboring gene uncharacterized LOC4346040 Neighboring gene uncharacterized LOC4346041

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in primary miRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serrate RNA effector molecule
    Names
    Os08g0517300
    P0686C03.151
    P0700D12.110
    putative C2H2 zinc-finger protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      25823061..25828605 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794314.3 → XP_015649800.1  serrate RNA effector molecule

      UniProtKB/TrEMBL
      B8B8W4, B9G1S9, Q7EZ93, Q7EZB4
      Conserved Domains (2) summary
      pfam04959
      Location:369 → 545
      ARS2; Arsenite-resistance protein 2
      pfam12066
      Location:131 → 212
      DUF3546; Domain of unknown function (DUF3546)

    RNA

    1. XR_003243778.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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    Research Materials