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    LOC4346135 MADS-box transcription factor 51-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346135, updated on 21-Dec-2023

    Summary

    Gene symbol
    LOC4346135
    Gene description
    MADS-box transcription factor 51-like
    Locus tag
    OSNPB_080531900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flower buds (RPKM 4.7), flowers (RPKM 4.3) and 3 other tissues See more
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    Genomic context

    See LOC4346135 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (26518931..26529089)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene squamosa promoter-binding-like protein 16 Neighboring gene MADS-box transcription factor 7-like Neighboring gene glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic-like Neighboring gene nuclear transport factor 2-like

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    MADS-box transcription factor 51-like
    Names
    Os08g0531900
    P0702E04.12
    P0702E04.14
    agamous-like MADS-box protein AGL3
    transcription factor MADS37
    transcription factor MADS37-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      26518931..26529089
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793951.2XP_015649437.1  MADS-box transcription factor 51-like isoform X1

      Conserved Domains (1) summary
      cd00265
      Location:1378
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    2. XM_015793952.2XP_015649438.1  MADS-box transcription factor 51-like isoform X2

      UniProtKB/TrEMBL
      A0A0P0XI85
      Conserved Domains (1) summary
      cd00265
      Location:1378
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...