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    ifi44d interferon-induced protein 44d [ Danio rerio (zebrafish) ]

    Gene ID: 795887, updated on 2-Nov-2024

    Summary

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    Official Symbol
    ifi44dprovided by ZNC
    Official Full Name
    interferon-induced protein 44dprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-200128-2
    See related
    Ensembl:ENSDARG00000010729 AllianceGenome:ZFIN:ZDB-GENE-200128-2
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    ifi44l
    Summary
    Orthologous to human IFI44 (interferon induced protein 44) and IFI44L (interferon induced protein 44 like). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See ifi44d in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (4371493..4375194, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (4347675..4351821, complement)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene phospholipid phosphatase related 1 Neighboring gene glutamate receptor, ionotropic, N-methyl-D-aspartate 3A Neighboring gene microRNA 430a-1 Neighboring gene polo-like kinase 2a (Drosophila)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. IFN-Stimulated Genes in Zebrafish and Humans Define an Ancient Arsenal of Antiviral Immunity. Levraud JP, et al. J Immunol, 2019 Dec 15. PMID 31732531
    2. Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes. Briolat V, et al. J Immunol, 2014 May 1. PMID 24683187
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC795887
    Names
    interferon-induced protein 44

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001386619.1 → NP_001373548.1  uncharacterized protein LOC795887

      Status: VALIDATED

      Source sequence(s)
      CABZ01073795
      UniProtKB/TrEMBL
      F1R223
      Related
      ENSDARP00000022947.7, ENSDART00000016102.8
      Conserved Domains (1) summary
      cl38936
      Location:19 → 102
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      4371493..4375194 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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