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    si:ch211-191a24.4 si:ch211-191a24.4 [ Danio rerio (zebrafish) ]

    Gene ID: 100150331, updated on 2-Nov-2024

    Summary

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    Official Symbol
    si:ch211-191a24.4provided by ZNC
    Official Full Name
    si:ch211-191a24.4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-4489
    See related
    Ensembl:ENSDARG00000037528 AllianceGenome:ZFIN:ZDB-GENE-030131-4489
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fd10g01; wu:fd10g01
    Summary
    Predicted to be located in membrane. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch211-191a24.4 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (6533260..6540933)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (6543313..6550991)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase RNF166 Neighboring gene meprin A subunit beta a Neighboring gene MCM3 minichromosome maintenance deficient 3 (S. cerevisiae), like Neighboring gene tensin 3, tandem duplicate 2 Neighboring gene insulin-like growth factor binding protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    part_of mRNA cleavage and polyadenylation specificity factor complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC100150331
    Names
    MARVEL domain-containing protein 3-like

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001045201.3 → NP_001038666.2  uncharacterized protein LOC100150331

      See identical proteins and their annotated locations for NP_001038666.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 encode the same protein.
      Source sequence(s)
      CT583652
      UniProtKB/TrEMBL
      A0A0R4IXG7, A0A8M3AT15, B8JKC4
      Conserved Domains (1) summary
      TIGR01622
      Location:4 → 71
      SF-CC1; splicing factor, CC1-like family

    2. NM_001171033.2 → NP_001164504.1  uncharacterized protein LOC100150331

      See identical proteins and their annotated locations for NP_001164504.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2 and 3 encode the same protein.
      Source sequence(s)
      CT583652
      UniProtKB/TrEMBL
      A0A0R4IXG7, A0A8M3AT15, B8JKC4
      Related
      ENSDARP00000054651.5, ENSDART00000054652.7
      Conserved Domains (1) summary
      TIGR01622
      Location:4 → 71
      SF-CC1; splicing factor, CC1-like family

    3. NM_001277124.1 → NP_001264053.1  uncharacterized protein LOC100150331

      See identical proteins and their annotated locations for NP_001264053.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 encode the same protein.
      Source sequence(s)
      CT583652, EH536239, EH577611
      UniProtKB/TrEMBL
      A0A0R4IXG7, A0A8M3AT15, B8JKC4
      Related
      ENSDARP00000133805.1, ENSDART00000166356.2
      Conserved Domains (1) summary
      TIGR01622
      Location:4 → 71
      SF-CC1; splicing factor, CC1-like family

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      6533260..6540933
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009294555.4 → XP_009292830.1  uncharacterized protein LOC100150331 isoform X1

      See identical proteins and their annotated locations for XP_009292830.1

      UniProtKB/TrEMBL
      A0A0R4IXG7, A0A8M3AT15, B8JKC4
      Conserved Domains (1) summary
      TIGR01622
      Location:4 → 71
      SF-CC1; splicing factor, CC1-like family

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395061.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      49979..57652
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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