synprb synaptoporin b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: synprbprovided by ZNC
Official Full Name: synaptoporin bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030616-625
See related: Ensembl:ENSDARG00000044278 AllianceGenome:ZFIN:ZDB-GENE-030616-625
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: synpr; wu:fq14d10; si:zc263a23.1; si:ch211-263a23.1
Summary: Predicted to be located in membrane and synaptic vesicle. Predicted to be active in synaptic vesicle membrane. Is expressed in epiphysis; female organism; forebrain; and male organism. Orthologous to human SYNPR (synaptoporin). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 6

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	6	NC_007117.7 (41223204..41229787, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	6	NC_007117.6 (41225668..41232251, complement)

Chromosome 6 - NC_007117.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by ZFIN

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in synaptic vesicle	IEA Inferred from Electronic Annotation more info
is_active_in synaptic vesicle membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: synaptoporin b

Names: synaptoporin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.