zyg11 zyg-11 family member, cell cycle regulator [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zyg11provided by ZNC
Official Full Name: zyg-11 family member, cell cycle regulatorprovided by ZNC
Primary source: ZFIN:ZDB-GENE-041014-17
See related: Ensembl:ENSDARG00000007737 AllianceGenome:ZFIN:ZDB-GENE-041014-17
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zyg11b; zgc:136612; zgc:152675; si:ch211-11m18.3
Summary: Acts upstream of or within cranial skeletal system development and notochord development. Predicted to be part of Cul2-RING ubiquitin ligase complex. Is expressed in female organism. Orthologous to several human genes including ZYG11B (zyg-11 family member B, cell cycle regulator). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 20

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	20	NC_007131.7 (16173681..16201879)
105	previous assembly	GRCz10 (GCF_000002035.5)	20	NC_007131.6 (16274098..16302296)

Chromosome 20 - NC_007131.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within cranial skeletal system development	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within notochord development	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
part_of Cul2-RING ubiquitin ligase complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

Go to the top of the page Help

Preferred Names: protein zyg-11 homolog

Names: zyg-11 homolog B

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001040332.2 → NP_001035422.1 protein zyg-11 homolog

See identical proteins and their annotated locations for NP_001035422.1

Status: PROVISIONAL

Source sequence(s)

BX942844

UniProtKB/Swiss-Prot

Q5TYQ1, Q5TYQ2

Related

ENSDARP00000094887.4, ENSDART00000104112.6

Conserved Domains (2) summary

cd00020
Location:504 → 611

ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...

sd00034
Location:77 → 105

LRR_AMN1; leucine-rich repeat [structural motif]