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    tex9 testis expressed 9 [ Danio rerio (zebrafish) ]

    Gene ID: 553441, updated on 2-Nov-2024

    Summary

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    Official Symbol
    tex9provided by ZNC
    Official Full Name
    testis expressed 9provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-110623-3
    See related
    Ensembl:ENSDARG00000010586 AllianceGenome:ZFIN:ZDB-GENE-110623-3
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Orthologous to human TEX9 (testis expressed 9). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See tex9 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (34496087..34506090, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (34224610..34234613, complement)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene CLN6 transmembrane ER protein a Neighboring gene calmodulin-like 4a Neighboring gene regulatory factor X7a Neighboring gene formin homology 2 domain containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Consequences of lineage-specific gene loss on functional evolution of surviving paralogs: ALDH1A and retinoic acid signaling in vertebrate genomes. Cañestro C, et al. PLoS Genet, 2009 May. PMID 19478994, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    testis-expressed protein 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001327746.1 → NP_001314675.1  testis-expressed protein 9

      Status: VALIDATED

      Source sequence(s)
      CU075695, FO704631
      UniProtKB/TrEMBL
      A0A8M1P8Y3, F1QU49
      Related
      ENSDARP00000026137.8, ENSDART00000024869.10
      Conserved Domains (1) summary
      cl24005
      Location:277 → 352
      DUF2570; Protein of unknown function (DUF2570)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      34496087..34506090 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068222295.1 → XP_068078396.1  testis-expressed protein 9 isoform X1

    Nucleotide Protein
    Heading Accession and Version

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