sh3yl1 SH3 and SYLF domain containing 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: sh3yl1provided by ZNC
Official Full Name: SH3 and SYLF domain containing 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-040128-16
See related: Ensembl:ENSDARG00000074393 AllianceGenome:ZFIN:ZDB-GENE-040128-16
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: sb:cb1095
Summary: Predicted to enable phosphatidylinositol binding activity. Predicted to be involved in regulation of ruffle assembly. Predicted to be active in ruffle membrane. Is expressed in yolk syncytial layer. Orthologous to human SH3YL1 (SH3 and SYLF domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 17

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	17	NC_007128.7 (30604506..30652714, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	17	NC_007128.6 (30587856..30635728, complement)

Chromosome 17 - NC_007128.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables phosphatidylinositol binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in regulation of ruffle assembly	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in ruffle membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: SH3 domain-containing YSC84-like protein 1

Names: SH3 domain containing, Ysc84-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.