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    • Showing Current items.

    si:ch211-80h18.1 si:ch211-80h18.1 [ Danio rerio (zebrafish) ]

    Gene ID: 555593, updated on 2-Nov-2024

    Summary

    Official Symbol
    si:ch211-80h18.1provided by ZNC
    Official Full Name
    si:ch211-80h18.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070705-257
    See related
    Ensembl:ENSDARG00000078522 AllianceGenome:ZFIN:ZDB-GENE-070705-257
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ct574549.1
    Summary
    Is expressed in otolith. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See si:ch211-80h18.1 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    41
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (3086851..3123966, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (3145953..3183076, complement)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene BOP1 ribosomal biogenesis factor Neighboring gene scleraxis bHLH transcription factor a Neighboring gene heat shock transcription factor 1 Neighboring gene starmaker Neighboring gene si:ch211-133n4.6

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    uncharacterized protein LOC555593

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001128332.1NP_001121804.1  uncharacterized protein LOC555593 precursor

      Status: PREDICTED

      Source sequence(s)
      CT574549
      UniProtKB/TrEMBL
      A0A8M1NH85, A5WW56, E7F009
      Related
      ENSDARP00000107187.2, ENSDART00000122816.4

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      3086851..3123966 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068215139.1XP_068071240.1  uncharacterized protein LOC555593 isoform X9

    2. XM_068215136.1XP_068071237.1  uncharacterized protein LOC555593 isoform X5

    3. XM_068215137.1XP_068071238.1  uncharacterized protein LOC555593 isoform X7

    4. XM_068215134.1XP_068071235.1  uncharacterized protein LOC555593 isoform X3

    5. XM_068215135.1XP_068071236.1  uncharacterized protein LOC555593 isoform X4

    6. XM_005159330.4XP_005159387.1  uncharacterized protein LOC555593 isoform X6

      UniProtKB/TrEMBL
      A0A8M2B687
    7. XM_009293949.3XP_009292224.1  uncharacterized protein LOC555593 isoform X2

      UniProtKB/TrEMBL
      A0A8M3AJX3
    8. XM_068215133.1XP_068071234.1  uncharacterized protein LOC555593 isoform X1

    9. XM_068215138.1XP_068071239.1  uncharacterized protein LOC555593 isoform X8