tm9sf2 transmembrane 9 superfamily member 2 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: tm9sf2provided by ZNC
Official Full Name: transmembrane 9 superfamily member 2provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-6302
See related: Ensembl:ENSDARG00000003866 AllianceGenome:ZFIN:ZDB-GENE-030131-6302
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: wu:fi20b05; wu:fi43d12
Summary: Predicted to be involved in protein localization to membrane. Predicted to be active in membrane. Is expressed in several structures, including digestive system; eye; heart; integument; and pleuroperitoneal region. Orthologous to human TM9SF2 (transmembrane 9 superfamily member 2). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 17

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	1	NC_007112.7 (29798143..29824372)
105	previous assembly	GRCz10 (GCF_000002035.5)	1	NC_007112.6 (28994212..29020441)

Chromosome 1 - NC_007112.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

A conserved immunoreceptor tyrosine-based inhibition motif exists in the cytoplasmic domain between transmembrane domains 7 & 8 in TM9SF2. A conserved TRAF2 binding domain is predicted in the cytoplasmic regions of TM9SF2.
Title: Comparative analysis of nonaspanin protein sequences and expression studies in zebrafish.

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General gene information

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Markers

fi43d12.x1 (e-PCR)
- UniSTS:197527

fc04a08.x1 (e-PCR)
- UniSTS:203689

AW153389 (e-PCR)
- UniSTS:205482

fa06b03.s1 (e-PCR)
- UniSTS:202224

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in protein localization to membrane	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: transmembrane 9 superfamily member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.