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    LINC00645 long intergenic non-protein coding RNA 645 [ Homo sapiens (human) ]

    Gene ID: 100505967, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00645provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 645provided by HGNC
    Primary source
    HGNC:HGNC:44299
    See related
    Ensembl:ENSG00000258548 AllianceGenome:HGNC:44299
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in kidney (RPKM 4.3) and endometrium (RPKM 0.8) See more
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    Genomic context

    See LINC00645 in Genome Data Viewer
    Location:
    14q12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (27612588..27639636)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (21810597..21837643)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (28081794..28108842)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370421 Neighboring gene RPS27A pseudogene 4 Neighboring gene MIR3171 host gene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:27975337-27975838 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:28142501-28143055 Neighboring gene microRNA 3171 Neighboring gene NANOG hESC enhancer GRCh37_chr14:28590607-28591309 Neighboring gene BCL2 interacting protein 3 pseudogene 1 Neighboring gene NANOG hESC enhancer GRCh37_chr14:28857194-28858165 Neighboring gene ribosomal protein L26 pseudogene 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_039992.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC042069, BX538073, BX538140, KF455842
      Related
      ENST00000557399.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      27612588..27639636
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      21810597..21837643
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)