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    TESHL testicular germ cell expressed HSF2 interacting lncRNA [ Homo sapiens (human) ]

    Gene ID: 101928327, updated on 10-Dec-2024

    Summary

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    Official Symbol
    TESHLprovided by HGNC
    Official Full Name
    testicular germ cell expressed HSF2 interacting lncRNAprovided by HGNC
    Primary source
    HGNC:HGNC:52740
    See related
    Ensembl:ENSG00000223874 AllianceGenome:HGNC:52740
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    DIRC3-AS1; LINC01921
    Expression
    Restricted expression toward testis (RPKM 70.6) See more
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    Genomic context

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    See TESHL in Genome Data Viewer
    Location:
    2q35
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (216870772..216871639)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (217353212..217354079)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (217735495..217736362)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124906118 Neighboring gene uncharacterized LOC105373876 Neighboring gene NANOG hESC enhancer GRCh37_chr2:217753461-217753988 Neighboring gene Sharpr-MPRA regulatory region 9678 Neighboring gene uncharacterized LOC105373874 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17102 Neighboring gene Sharpr-MPRA regulatory region 4936 Neighboring gene uncharacterized LOC105373873 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:217928846-217930045

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Testicular germ cell-specific lncRNA, Teshl, is required for complete expression of Y chromosome genes and a normal offspring sex ratio. Hong SH, et al. Sci Adv, 2021 Jun. PMID 34108217, Free PMC Article
    2. A panel of extracellular vesicle long noncoding RNAs in seminal plasma for predicting testicular spermatozoa in nonobstructive azoospermia patients. Xie Y, et al. Hum Reprod, 2020 Nov 1. PMID 32914196
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • DIRC3 antisense RNA 1
    • long intergenic non-protein coding RNA 1921

    Clone Names

    • AC007557.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_130782.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC021184, BC090895
      Related
      ENST00000838375.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      216870772..216871639
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      217353212..217354079
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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