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    RDN5-3 5S ribosomal RNA [ Saccharomyces cerevisiae S288C ]

    Gene ID: 9164924, updated on 7-Sep-2023

    Summary

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    Gene symbol
    RDN5-3
    Gene description
    5S ribosomal RNA
    Primary source
    SGD:S000006481
    Locus tag
    YNCL0028W
    See related
    AllianceGenome:SGD:S000006481
    Gene type
    rRNA
    RNA name
    5S ribosomal RNA
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    A structural constituent of ribosome. Involved in cytoplasmic translation. Part of cytosolic large ribosomal subunit. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See RDN5-3 in Genome Data Viewer
    Location:
    chromosome: XII
    Exon count:
    1
    Sequence:
    Chromosome: XII; NC_001144.5 (472465..472583)

    Chromosome XII - NC_001144.5Genomic Context describing neighboring genes Neighboring gene asparaginase ASP3-1 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene asparaginase ASP3-2 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001144.5

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structural and functional analysis of 5S rRNA in Saccharomyces cerevisiae. Kiparisov S, et al. Mol Genet Genomics, 2005 Oct. PMID 16047201, Free PMC Article
    2. Terminal structure mediates 5 S rRNA stability and integration during ribosome biogenesis. Lee Y, et al. J Biol Chem, 2003 Feb 28. PMID 12471019
    3. Saturation mutagenesis of 5S rRNA in Saccharomyces cerevisiae. Smith MW, et al. Mol Cell Biol, 2001 Dec. PMID 11713264, Free PMC Article
    4. RNA polymerase III transcription complexes on chromosomal 5S rRNA genes in vivo: TFIIIB occupancy and promoter opening. Costanzo G, et al. Mol Cell Biol, 2001 May. PMID 11287621, Free PMC Article
    5. 5 S rRNA is involved in fidelity of translational reading frame. Dinman JD, et al. Genetics, 1995 Sep. PMID 8536994, Free PMC Article

    See all (24) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    • Variant 5S ribosomal RNA (5S rRNA) gene; located at a site distal to the RDN1 locus; unable to support cell viability when provided as sole source of 5S rRNA; identical in sequence to variant alleles RDN5-2, RDN5-4, and RDN5-5

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables structural constituent of ribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001144.5 Reference assembly

      Range
      472465..472583
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_132225.1 RNA Sequence

      Status: REVIEWED

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