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    Cypt15-ps cysteine-rich perinuclear theca 15 [ Mus musculus (house mouse) ]

    Gene ID: 78631, updated on 17-Aug-2024

    Summary

    Official Symbol
    Cypt15-psprovided by MGI
    Official Full Name
    cysteine-rich perinuclear theca 15provided by MGI
    Primary source
    MGI:MGI:3616461
    See related
    Ensembl:ENSMUSG00000121886 AllianceGenome:MGI:3616461
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Cypt15; 1700085A12Rik
    Expression
    Restricted expression toward testis adult (RPKM 4.6) See more
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    Genomic context

    See Cypt15-ps in Genome Data Viewer
    Location:
    X A3.3; X 23.19 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (38435143..38435840)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (39346266..39346963)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S27-like Neighboring gene STARR-seq mESC enhancer starr_47028 Neighboring gene STARR-seq mESC enhancer starr_47029 Neighboring gene predicted gene, 26437 Neighboring gene STARR-seq mESC enhancer starr_47031 Neighboring gene STARR-seq mESC enhancer starr_47032 Neighboring gene STARR-seq mESC enhancer starr_47034 Neighboring gene ribosomal protein SA pseudogene Neighboring gene cysteine-rich perinuclear theca 14, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_175957.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL824713
      Related
      ENSMUST00000115114.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      38435143..38435840
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001177380.1: Suppressed sequence

      Description
      NM_001177380.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.