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    GRM7-AS3 GRM7 antisense RNA 3 [ Homo sapiens (human) ]

    Gene ID: 101927347, updated on 17-Sep-2024

    Summary

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    Official Symbol
    GRM7-AS3provided by HGNC
    Official Full Name
    GRM7 antisense RNA 3provided by HGNC
    Primary source
    HGNC:HGNC:42444
    See related
    Ensembl:ENSG00000226258 AllianceGenome:HGNC:42444
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 2.4) See more
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    Genomic context

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    See GRM7-AS3 in Genome Data Viewer
    Location:
    3p26.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (6632358..6805449, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (6622736..6796027, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (6674045..6847136, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376942 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:6325607-6326107 Neighboring gene uncharacterized LOC124909341 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:6531900-6533099 Neighboring gene uncharacterized LOC105376944 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_70950 Neighboring gene MPRA-validated peak4528 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19389 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:6810923-6811530 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:6811531-6812137 Neighboring gene uncharacterized LOC105376943 Neighboring gene YWHAQ pseudogene Neighboring gene uncharacterized LOC105376945 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:6902925-6903916 Neighboring gene mitochondrial ribosomal protein S36 pseudogene 1 Neighboring gene GRM7 antisense RNA 2 Neighboring gene glutamate metabotropic receptor 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • GRM7 antisense RNA 3 (non-protein coding)

    Clone Names

    • AC069277.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110123.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      BX113348, DB447952

    2. NR_110125.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate 3' structure resulting in a shorter transcript compared to variant 1.
      Source sequence(s)
      AC023485, BX117432
      Related
      ENST00000417482.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      6632358..6805449 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      6622736..6796027 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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