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    TMEM202 transmembrane protein 202 [ Homo sapiens (human) ]

    Gene ID: 338949, updated on 28-Oct-2024

    Summary

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    Official Symbol
    TMEM202provided by HGNC
    Official Full Name
    transmembrane protein 202provided by HGNC
    Primary source
    HGNC:HGNC:33733
    See related
    Ensembl:ENSG00000187806 AllianceGenome:HGNC:33733
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    Predicted to be located in membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Restricted expression toward testis (RPKM 5.8) See more
    Orthologs
    mouse all
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    Genomic context

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    See TMEM202 in Genome Data Viewer
    Location:
    15q23-q24.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (72398305..72408367)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (70215636..70225698)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (72690646..72700708)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:72668147-72668703 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9721 Neighboring gene HEXA antisense RNA 1 Neighboring gene ribosomal protein L12 pseudogene 35 Neighboring gene TMEM202 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:72743763-72744262 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9722 Neighboring gene PHB1 pseudogene 20 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9723 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:72766566-72766762 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6624 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9724 Neighboring gene ariadne RBR E3 ubiquitin protein ligase 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6625 Neighboring gene MPRA-validated peak2380 silencer Neighboring gene microRNA 630

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. A novel p53 regulator, C16ORF72/TAPR1, buffers against telomerase inhibition. Benslimane Y, et al. Aging Cell, 2021 Apr. PMID 33660365, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • FLJ27523

    Gene Ontology Provided by GOA

    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 202

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080462.3 → NP_001073931.1  transmembrane protein 202

      See identical proteins and their annotated locations for NP_001073931.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest, protein-coding variant.
      Source sequence(s)
      AC009690, AC079322
      Consensus CDS
      CCDS32287.1
      UniProtKB/Swiss-Prot
      A6NGA9
      Related
      ENSP00000340212.3, ENST00000341689.4

    RNA

    1. NR_148418.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC009690, AC079322, AK131033, BX105628

    2. NR_148419.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC009690, AC079322, AK131033

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      72398305..72408367
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011521497.3 → XP_011519799.1  transmembrane protein 202 isoform X1

    2. XM_024449910.2 → XP_024305678.1  transmembrane protein 202 isoform X2

    3. XM_011521499.3 → XP_011519801.1  transmembrane protein 202 isoform X3

      See identical proteins and their annotated locations for XP_011519801.1

      UniProtKB/TrEMBL
      A0A3B3ITB0
      Related
      ENSP00000497819.1, ENST00000649825.1

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      70215636..70225698
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054377803.1 → XP_054233778.1  transmembrane protein 202 isoform X2

    2. XM_054377804.1 → XP_054233779.1  transmembrane protein 202 isoform X3

      UniProtKB/TrEMBL
      A0A3B3ITB0

    3. XM_054377802.1 → XP_054233777.1  transmembrane protein 202 isoform X1

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A6NGA9.1 GenPept UniProtKB/Swiss-Prot:A6NGA9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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