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    LINC01107 long intergenic non-protein coding RNA 1107 [ Homo sapiens (human) ]

    Gene ID: 151171, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01107provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1107provided by HGNC
    Primary source
    HGNC:HGNC:49229
    See related
    Ensembl:ENSG00000225493 AllianceGenome:HGNC:49229
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 2.1) See more
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    Genomic context

    See LINC01107 in Genome Data Viewer
    Location:
    2q37.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (238510690..238555499, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (239000787..239045598, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (239419331..239464140, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12498 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17383 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:239347665-239348864 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239349077-239349578 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239349579-239350078 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239358923-239359430 Neighboring gene uncharacterized LOC107986003 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239359431-239359936 Neighboring gene zinc finger protein 256 pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:239363467-239363967 Neighboring gene ankyrin repeat and SOCS box containing 1 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:239417633-239418320 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:239418321-239419006 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:239426272-239427471 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239431154-239432062 Neighboring gene uncharacterized LOC124906130 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239464607-239465108 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239508477-239508992 Neighboring gene MPRA-validated peak4103 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239547211-239547712 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr2:239565991-239566613 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:239592463-239593662 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239605714-239606214 Neighboring gene uncharacterized LOC105373963 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239639105-239639604 Neighboring gene long intergenic non-protein coding RNA 1937

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_037809.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092619
      Related
      ENST00000446979.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      238510690..238555499 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      239000787..239045598 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)