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    rps11 ribosomal protein S11 [ Danio rerio (zebrafish) ]

    Gene ID: 406686, updated on 10-Nov-2024

    Summary

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    Official Symbol
    rps11provided by ZNC
    Official Full Name
    ribosomal protein S11provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2701
    See related
    Ensembl:ENSDARG00000053058 AllianceGenome:ZFIN:ZDB-GENE-040426-2701
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:56293; wu:fa91c09; wu:fb34b11
    Summary
    Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS11 (ribosomal protein S11). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See rps11 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (37787275..37789235)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (37645417..37647377)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene apoptosis regulator BAX-like Neighboring gene small nucleolar RNA SNORD35 Neighboring gene small nucleolar RNA SNORD35 Neighboring gene small nucleolar RNA SNORD35 Neighboring gene small nucleolar RNA SNORD35 Neighboring gene BCL2 associated X, apoptosis regulator a Neighboring gene homologous recombination factor with OB-fold Neighboring gene acid-sensing (proton-gated) ion channel 2 Neighboring gene uncharacterized LOC110439297

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Intestinal Cetobacterium and acetate modify glucose homeostasis via parasympathetic activation in zebrafish. Wang A, et al. Gut Microbes, 2021 Jan-Dec. PMID 33840371, Free PMC Article
    2. Automated in vivo screen in zebrafish identifies Clotrimazole as targeting a metabolic vulnerability in a melanoma model. Precazzini F, et al. Dev Biol, 2020 Jan 15. PMID 30998907
    3. Rad21 Haploinsufficiency Prevents ALT-Associated Phenotypes in Zebrafish Brain Tumors. Idilli AI, et al. Genes (Basel), 2020 Nov 30. PMID 33266037, Free PMC Article
    4. Gasdermin E mediates pyroptotic cell death of neutrophils and macrophages in a zebrafish model of chronic skin inflammation. Lozano-Gil JM, et al. Dev Comp Immunol, 2022 Jul. PMID 35341794
    5. Duox1-derived H2O2 modulates Cxcl8 expression and neutrophil recruitment via JNK/c-JUN/AP-1 signaling and chromatin modifications. de Oliveira S, et al. J Immunol, 2015 Feb 15. PMID 25582859

    See all (56) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    small ribosomal subunit protein uS17
    Names
    40S ribosomal protein s11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213377.1 → NP_998542.1  small ribosomal subunit protein uS17

      See identical proteins and their annotated locations for NP_998542.1

      Status: PROVISIONAL

      Source sequence(s)
      BC046054
      UniProtKB/TrEMBL
      B0JZI8, Q7ZV05
      Related
      ENSDARP00000069513.5, ENSDART00000075028.6
      Conserved Domains (3) summary
      PTZ00241
      Location:1 → 159
      PTZ00241; 40S ribosomal protein S11; Provisional
      pfam00366
      Location:76 → 145
      Ribosomal_S17; Ribosomal protein S17
      pfam16205
      Location:5 → 74
      Ribosomal_S17_N; Ribosomal_S17 N-terminal

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      37787275..37789235
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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